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1

Simulation of multiphase systems utilizing independent force fields to control intraphase and interphase behavior

Pradip K. Biswas, Nadeem A. Vellore, Jeremy A. Yancey, Tugba G. Kucukkal, Galen Collier, Bernard R. Brooks, Steven J. Stuart, Robert A. Latour

Journal:

Journal of Computational Chemistry

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

2

Computational and structural studies of MeCP2 and associated mutants

Kucukkal, Tugba G., Amin, Rijul U.

Journal:

Journal of Theoretical and Computational Chemistry

Year:

2020

File:

PDF, 260 KB

2020

3

Polarizable Molecular Dynamics Simulations of Aqueous Dipeptides

Kucukkal, Tugba G., Stuart, Steven J.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 960 KB

english, 2012

4

Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins

Kucukkal, Tugba G, Petukh, Marharyta, Li, Lin, Alexov, Emil

Journal:

Current Opinion in Structural Biology

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

5

On Human Disease-Causing Amino Acid Variants: Statistical Study of Sequence and Structural Patterns

Petukh, Marharyta, Kucukkal, Tugba G., Alexov, Emil

Journal:

Year:

2015

Language:

english

File:

PDF, 940 KB

english, 2015

6

Computational and Experimental Approaches to Reveal the Effects of Single Nucleotide Polymorphisms with Respect to Disease Diagnostics

Kucukkal, Tugba, Yang, Ye, Chapman, Susan, Cao, Weiguo, Alexov, Emil

Journal:

International Journal of Molecular Sciences

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

7

Impact of Rett Syndrome Mutations on MeCP2 MBD Stability

Kucukkal, Tugba, Yang, Ye, Uvarov, Olga, Cao, Weiguo, Alexov, Emil

Journal:

Year:

2015

Language:

english

File:

PDF, 2.29 MB

english, 2015

8

Binding Analysis of Methyl-CpG Binding Domain of MeCP2 and Rett Syndrome Mutations

Yang, Ye, Kucukkal, Tugba G, Li, Jing, Alexov, Emil, Cao, Weiguo

Journal:

ACS Chemical Biology

Year:

2016

Language:

english

File:

PDF, 469 KB

english, 2016

9

Structural, Dynamical, and Energetical Consequences of Rett Syndrome Mutation R133C in MeCP2

Kucukkal, Tugba G., Alexov, Emil

Journal:

Computational and Mathematical Methods in Medicine

Year:

2015

Language:

english

File:

PDF, 7.47 MB

english, 2015

10

Mutations in the KDM5C ARID Domain and Their Plausible Association with Syndromic Claes-Jensen-Type Disease

Peng, Yunhui, Suryadi, Jimmy, Yang, Ye, Kucukkal, Tugba, Cao, Weiguo, Alexov, Emil

Journal:

International Journal of Molecular Sciences

Year:

2015

Language:

english

File:

PDF, 3.71 MB

english, 2015

11

Modeling Ion Permeation in Wild-Type and Mutant Human α7 Nachr Ion Channels

Kucukkal, Tugba G., Alsaiari, Feras, Stuart, Steven J.

Journal:

Journal of Theoretical and Computational Chemistry

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018